Vicente, J., Randin, C.F., Gonçalves, J., Metzger, M., Lomba, A., Honrado, J. and Guisan, A. (2011) Where will conflicts between alien and rare species occur after climate and land-use change? A test with a novel combined modeling approach. Biological Invasions. 13:1209–1227

Cerqueira Y,  Araújo C, Vicente J, Pereira HM & Honrado J (2010) "Ecological and Cultural Consequences of Agricultural Abandonment in the Peneda-Gerês National Park (Portugal)" Chapter 2 in: Evelpidou N, Figueiredo T, Mauro F, Tecim V & Vassilopoulos A (Eds.) "Natural Heritage from East to West". 1st Edition., 2010, XIII, 363 p., Hardcover. ISBN: 978-3-642-01576-2. Springer

Honrado, J., J. Vicente, A. Lomba, P. Alves, J. A. Macedo, R. Henriques, H. Granja & F. B. Caldas (2010). Fine-scale patterns of vegetation assembly in the monitoring of changes in coastal sand-dune landscapes. Web Ecology, 9: 82–95.

Macedo, J. A., P. Alves, A. Lomba, J. Vicente, H. Hespanhol, R. Henriques, H. Granja & J. Honrado (2010). On the interest of plant functional classifications to study community-level effects of increased disturbance on coastal dune vegetation. Acta Botanica Gallica. 157(2): 305-315

Lomba, A., Pellissier, L., Randin, C., Vicente, J., Moreira, F., Honrado, J., Guisan, A. (2010) Overcoming the rare species modelling paradox: A novel hierarchical framework applied to an Iberian endemic plant. Biological Conservation 143, 2647-2657.

Vicente J, Alves P, Randin C, Guisan A and Honrado J (2010) What drives invasibility? A multi-model inference test and spatial modelling of alien plant species richness patterns in Northern Portugal. Ecography  33(6):1081-1092

Honrado J, F.B. Caldas, P. Alves, J. Vicente (2008). "Biodiversidade e Recursos Biológicos: Vegetação e flora vascular". In: J.M. Alonso (coord.) "As condições naturais do território de Ponte de Lima". Município de Ponte de Lima.

Vicente J (2007). Spatially Explicit Hierarchic Predictive Modeling of Vascular Plants Distribution. Master thesis presented at the Science College of the Oporto University. [In Portuguese]

Honrado J, Alves P, Lomba A, Vicente J, Silva G, Nepomuceno H and Caldas FB (2007). Perennial vegetation of coastal sand dunes in northern Portugal. Silva Lusitana, 14: 269-275.

Vicente J (2005). The land-use, the landscape structure and the biodiversity distribution. Impacts of anthropic management on plant diversity patterns. Bachelor thesis presented at the Science College of the Oporto University. (In Portuguese)